Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28AQ8IWP9 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28AQ8IWP9 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC005915.1-201ENST00000624912 2018 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 BX276092.2-201ENST00000417668 665 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC092666.2-201ENST00000613287 246 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 MYC-208ENST00000641036 567 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 KRT8P8-201ENST00000434750 1448 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 AC022532.1-201ENST00000624563 1728 ntBASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms