Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF549Q6P9A3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC096582.2-201ENST00000510860 516 ntBASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AP000867.3-201ENST00000524675 377 ntBASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC093525.9-201ENST00000624961 1746 ntBASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF549Q6P9A3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF549Q6P9A3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 AC009336.1-201ENST00000608941 1553 ntBASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms