Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
FOXA3P55318 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
FOXA3P55318 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA3P55318 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA3P55318 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA3P55318 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA3P55318 AC133041.1-202ENST00000642053 222 ntBASIC13.1□□□□□ -0.31
FOXA3P55318 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
FOXA3P55318 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA3P55318 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA3P55318 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA3P55318 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 LYSMD4-203ENST00000378904 2122 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.09□□□□□ -0.31
FOXA3P55318 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 AC239809.2-201ENST00000415381 517 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 B3GAT3P1-201ENST00000471720 806 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC13.09□□□□□ -0.31
FOXA3P55318 AC104390.1-201ENST00000555663 520 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA3P55318 LINC02012-201ENST00000608206 1725 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 AC110285.5-201ENST00000611501 352 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 MIR6786-201ENST00000616843 113 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 AC023824.1-201ENST00000562945 2975 ntBASIC13.09□□□□□ -0.31
FOXA3P55318 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA3P55318 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA3P55318 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms