Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.41■■□□□ 1.02
NUP98P52948 AL031055.1-201ENST00000606362 631 ntBASIC21.41■■□□□ 1.02
NUP98P52948 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUP98P52948 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUP98P52948 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.41■■□□□ 1.02
NUP98P52948 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NUP98P52948 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NUP98P52948 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NUP98P52948 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.4■■□□□ 1.02
NUP98P52948 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.4■■□□□ 1.02
NUP98P52948 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
NUP98P52948 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.4■■□□□ 1.02
NUP98P52948 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
NUP98P52948 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
NUP98P52948 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.4■■□□□ 1.02
NUP98P52948 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.4■■□□□ 1.02
NUP98P52948 RNU1-129P-201ENST00000384064 167 ntBASIC21.4■■□□□ 1.02
NUP98P52948 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.4■■□□□ 1.02
NUP98P52948 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
NUP98P52948 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.4■■□□□ 1.02
NUP98P52948 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 U1.21-201ENST00000580816 167 ntBASIC21.4■■□□□ 1.02
NUP98P52948 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 WASH6P-202ENST00000359512 1437 ntBASIC21.4■■□□□ 1.02
NUP98P52948 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NUP98P52948 AC008764.6-201ENST00000595909 2069 ntBASIC21.4■■□□□ 1.02
NUP98P52948 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NUP98P52948 FAM86GP-201ENST00000448322 971 ntBASIC21.39■■□□□ 1.02
NUP98P52948 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.39■■□□□ 1.02
NUP98P52948 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.39■■□□□ 1.02
NUP98P52948 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
NUP98P52948 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.39■■□□□ 1.02
NUP98P52948 AL390955.2-201ENST00000603032 514 ntBASIC21.39■■□□□ 1.02
NUP98P52948 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.39■■□□□ 1.01
NUP98P52948 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.39■■□□□ 1.01
NUP98P52948 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
NUP98P52948 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.39■■□□□ 1.01
NUP98P52948 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.39■■□□□ 1.01
NUP98P52948 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.39■■□□□ 1.01
NUP98P52948 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.39■■□□□ 1.01
NUP98P52948 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NUP98P52948 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.39■■□□□ 1.01
NUP98P52948 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 AL353732.1-201ENST00000569618 1459 ntBASIC21.38■■□□□ 1.01
NUP98P52948 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.38■■□□□ 1.01
NUP98P52948 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC21.38■■□□□ 1.01
NUP98P52948 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.38■■□□□ 1.01
NUP98P52948 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.38■■□□□ 1.01
NUP98P52948 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.38■■□□□ 1.01
NUP98P52948 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.38■■□□□ 1.01
NUP98P52948 FAM86C2P-203ENST00000528684 1004 ntBASIC21.38■■□□□ 1.01
NUP98P52948 AC069262.1-201ENST00000539058 672 ntBASIC21.38■■□□□ 1.01
NUP98P52948 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.38■■□□□ 1.01
NUP98P52948 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.38■■□□□ 1.01
NUP98P52948 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
NUP98P52948 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NUP98P52948 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
NUP98P52948 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUP98P52948 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
NUP98P52948 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.37■■□□□ 1.01
NUP98P52948 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUP98P52948 AC012569.1-201ENST00000591191 1524 ntBASIC21.37■■□□□ 1.01
NUP98P52948 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NUP98P52948 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NUP98P52948 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.37■■□□□ 1.01
NUP98P52948 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.37■■□□□ 1.01
NUP98P52948 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.37■■□□□ 1.01
NUP98P52948 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.37■■□□□ 1.01
NUP98P52948 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.37■■□□□ 1.01
NUP98P52948 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms