Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC100757.3-201ENST00000622361 1406 ntBASIC22.66■■□□□ 1.22
COL18A1P39060 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC22.65■■□□□ 1.22
COL18A1P39060 BX323043.1-201ENST00000641006 1765 ntBASIC22.65■■□□□ 1.22
COL18A1P39060 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC22.65■■□□□ 1.22
COL18A1P39060 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC22.65■■□□□ 1.22
COL18A1P39060 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL18A1P39060 AC027307.2-201ENST00000591252 911 ntBASIC22.65■■□□□ 1.22
COL18A1P39060 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC22.65■■□□□ 1.22
COL18A1P39060 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.65■■□□□ 1.22
COL18A1P39060 PODN-203ENST00000395871 2744 ntTSL 5 BASIC22.65■■□□□ 1.22
COL18A1P39060 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL18A1P39060 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC22.64■■□□□ 1.22
COL18A1P39060 AC090164.3-201ENST00000610780 2143 ntBASIC22.64■■□□□ 1.22
COL18A1P39060 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC22.64■■□□□ 1.22
COL18A1P39060 AC063926.2-201ENST00000623766 1308 ntBASIC22.64■■□□□ 1.22
COL18A1P39060 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC22.64■■□□□ 1.22
COL18A1P39060 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC22.64■■□□□ 1.22
COL18A1P39060 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC22.64■■□□□ 1.22
COL18A1P39060 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL18A1P39060 IGHV3-42-201ENST00000520410 361 ntBASIC22.64■■□□□ 1.22
COL18A1P39060 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC22.64■■□□□ 1.22
COL18A1P39060 AC025048.6-201ENST00000634326 1161 ntBASIC22.64■■□□□ 1.22
COL18A1P39060 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.64■■□□□ 1.21
COL18A1P39060 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
COL18A1P39060 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.64■■□□□ 1.21
COL18A1P39060 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC22.64■■□□□ 1.21
COL18A1P39060 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL18A1P39060 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC22.63■■□□□ 1.21
COL18A1P39060 SATB1-217ENST00000493952 626 ntTSL 3 BASIC22.63■■□□□ 1.21
COL18A1P39060 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC22.63■■□□□ 1.21
COL18A1P39060 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
COL18A1P39060 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC22.63■■□□□ 1.21
COL18A1P39060 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC22.63■■□□□ 1.21
COL18A1P39060 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC22.63■■□□□ 1.21
COL18A1P39060 MIR346-201ENST00000362234 95 ntBASIC22.63■■□□□ 1.21
COL18A1P39060 AC142381.1-201ENST00000426099 345 ntBASIC22.63■■□□□ 1.21
COL18A1P39060 TMPRSS11CP-201ENST00000453277 683 ntBASIC22.63■■□□□ 1.21
COL18A1P39060 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC22.63■■□□□ 1.21
COL18A1P39060 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 SRP9-204ENST00000619790 377 ntTSL 2 BASIC22.63■■□□□ 1.21
COL18A1P39060 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL18A1P39060 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL18A1P39060 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC22.62■■□□□ 1.21
COL18A1P39060 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
COL18A1P39060 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL18A1P39060 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC22.62■■□□□ 1.21
COL18A1P39060 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC22.62■■□□□ 1.21
COL18A1P39060 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.62■■□□□ 1.21
COL18A1P39060 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
COL18A1P39060 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
COL18A1P39060 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL18A1P39060 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC22.62■■□□□ 1.21
COL18A1P39060 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC22.62■■□□□ 1.21
COL18A1P39060 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.62■■□□□ 1.21
COL18A1P39060 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.62■■□□□ 1.21
COL18A1P39060 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL18A1P39060 AC016027.1-202ENST00000607927 1699 ntBASIC22.61■■□□□ 1.21
COL18A1P39060 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL18A1P39060 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC22.61■■□□□ 1.21
COL18A1P39060 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL18A1P39060 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL18A1P39060 CALY-202ENST00000368555 783 ntTSL 2 BASIC22.61■■□□□ 1.21
COL18A1P39060 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC22.61■■□□□ 1.21
COL18A1P39060 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC22.61■■□□□ 1.21
COL18A1P39060 COX5BP8-201ENST00000416911 349 ntBASIC22.61■■□□□ 1.21
COL18A1P39060 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC22.61■■□□□ 1.21
COL18A1P39060 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms