Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.86■□□□□ 0.77
SMARCA1P28370 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMARCA1P28370 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.86■□□□□ 0.77
SMARCA1P28370 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SMARCA1P28370 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
SMARCA1P28370 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.86■□□□□ 0.77
SMARCA1P28370 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.86■□□□□ 0.77
SMARCA1P28370 AC141586.5-201ENST00000624546 2050 ntBASIC19.86■□□□□ 0.77
SMARCA1P28370 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SMARCA1P28370 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SMARCA1P28370 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 PCDHB18P-201ENST00000524813 2368 ntBASIC19.86■□□□□ 0.77
SMARCA1P28370 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMARCA1P28370 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SMARCA1P28370 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.86■□□□□ 0.77
SMARCA1P28370 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.86■□□□□ 0.77
SMARCA1P28370 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.85■□□□□ 0.77
SMARCA1P28370 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SMARCA1P28370 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.85■□□□□ 0.77
SMARCA1P28370 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.85■□□□□ 0.77
SMARCA1P28370 AC108751.1-201ENST00000490852 363 ntBASIC19.85■□□□□ 0.77
SMARCA1P28370 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 AC124947.2-201ENST00000547118 1133 ntBASIC19.85■□□□□ 0.77
SMARCA1P28370 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SMARCA1P28370 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCA1P28370 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCA1P28370 PI4KAP1-204ENST00000612579 1703 ntBASIC19.85■□□□□ 0.77
SMARCA1P28370 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SMARCA1P28370 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SMARCA1P28370 ZNF259P1-201ENST00000407656 1365 ntBASIC19.84■□□□□ 0.77
SMARCA1P28370 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.84■□□□□ 0.77
SMARCA1P28370 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
SMARCA1P28370 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
SMARCA1P28370 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 AC108073.2-201ENST00000464002 357 ntBASIC19.84■□□□□ 0.77
SMARCA1P28370 SLC25A1P1-201ENST00000528351 927 ntBASIC19.84■□□□□ 0.77
SMARCA1P28370 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.84■□□□□ 0.77
SMARCA1P28370 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.84■□□□□ 0.77
SMARCA1P28370 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.84■□□□□ 0.77
SMARCA1P28370 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SMARCA1P28370 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.84■□□□□ 0.77
SMARCA1P28370 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.84■□□□□ 0.77
SMARCA1P28370 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCA1P28370 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCA1P28370 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SMARCA1P28370 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SMARCA1P28370 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCA1P28370 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.83■□□□□ 0.77
SMARCA1P28370 AL022342.1-201ENST00000400363 863 ntBASIC19.83■□□□□ 0.77
SMARCA1P28370 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.83■□□□□ 0.77
SMARCA1P28370 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.83■□□□□ 0.77
SMARCA1P28370 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.83■□□□□ 0.77
SMARCA1P28370 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.83■□□□□ 0.77
SMARCA1P28370 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.83■□□□□ 0.77
SMARCA1P28370 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.83■□□□□ 0.76
SMARCA1P28370 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCA1P28370 AC104109.2-201ENST00000602919 1418 ntBASIC19.83■□□□□ 0.76
SMARCA1P28370 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms