Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
BDNFP23560 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.31■□□□□ 0.52
BDNFP23560 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
BDNFP23560 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.31■□□□□ 0.52
BDNFP23560 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
BDNFP23560 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
BDNFP23560 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.3■□□□□ 0.52
BDNFP23560 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 AC108751.1-201ENST00000490852 363 ntBASIC18.3■□□□□ 0.52
BDNFP23560 RPS15P9-201ENST00000494093 319 ntBASIC18.3■□□□□ 0.52
BDNFP23560 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.3■□□□□ 0.52
BDNFP23560 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BDNFP23560 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BDNFP23560 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.29■□□□□ 0.52
BDNFP23560 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
BDNFP23560 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.29■□□□□ 0.52
BDNFP23560 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.29■□□□□ 0.52
BDNFP23560 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.29■□□□□ 0.52
BDNFP23560 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.29■□□□□ 0.52
BDNFP23560 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 GPR89P-201ENST00000407924 1495 ntBASIC18.29■□□□□ 0.52
BDNFP23560 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 PTCHD3P3-201ENST00000403073 906 ntBASIC18.29■□□□□ 0.52
BDNFP23560 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.29■□□□□ 0.52
BDNFP23560 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 AC140113.2-201ENST00000604370 208 ntBASIC18.29■□□□□ 0.52
BDNFP23560 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.29■□□□□ 0.52
BDNFP23560 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
BDNFP23560 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.28■□□□□ 0.52
BDNFP23560 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.28■□□□□ 0.52
BDNFP23560 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.28■□□□□ 0.52
BDNFP23560 TERC-201ENST00000602385 541 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms