Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.52□□□□□ -0.25
CXCL1P09341 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC13.52□□□□□ -0.25
CXCL1P09341 AC004951.3-201ENST00000418645 1148 ntBASIC13.52□□□□□ -0.25
CXCL1P09341 NIFKP9-201ENST00000419265 221 ntBASIC13.52□□□□□ -0.25
CXCL1P09341 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC13.52□□□□□ -0.25
CXCL1P09341 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC13.52□□□□□ -0.25
CXCL1P09341 CKBP1-201ENST00000565489 1086 ntBASIC13.52□□□□□ -0.25
CXCL1P09341 WT1-AS_3.1-201ENST00000613262 234 ntBASIC13.52□□□□□ -0.25
CXCL1P09341 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.52□□□□□ -0.25
CXCL1P09341 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.52□□□□□ -0.25
CXCL1P09341 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.52□□□□□ -0.25
CXCL1P09341 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.52□□□□□ -0.25
CXCL1P09341 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.52□□□□□ -0.25
CXCL1P09341 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.52□□□□□ -0.25
CXCL1P09341 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 SNX18-202ENST00000343017 3140 ntBASIC13.52□□□□□ -0.25
CXCL1P09341 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CXCL1P09341 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CXCL1P09341 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CXCL1P09341 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CXCL1P09341 MIR564-202ENST00000385049 94 ntBASIC13.51□□□□□ -0.25
CXCL1P09341 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.51□□□□□ -0.25
CXCL1P09341 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC13.51□□□□□ -0.25
CXCL1P09341 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 AC069152.1-201ENST00000438030 544 ntBASIC13.51□□□□□ -0.25
CXCL1P09341 AC091390.4-202ENST00000476426 537 ntBASIC13.51□□□□□ -0.25
CXCL1P09341 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
CXCL1P09341 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC13.51□□□□□ -0.25
CXCL1P09341 AC026271.3-201ENST00000571884 352 ntBASIC13.51□□□□□ -0.25
CXCL1P09341 IKBKGP1-201ENST00000612193 1073 ntBASIC13.51□□□□□ -0.25
CXCL1P09341 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.51□□□□□ -0.25
CXCL1P09341 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CXCL1P09341 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CXCL1P09341 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CXCL1P09341 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.5□□□□□ -0.25
CXCL1P09341 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.5□□□□□ -0.25
CXCL1P09341 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CXCL1P09341 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms