Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
MMP3P08254 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
MMP3P08254 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 AC002056.1-201ENST00000395613 760 ntBASIC19.11■□□□□ 0.65
MMP3P08254 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.11■□□□□ 0.65
MMP3P08254 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.11■□□□□ 0.65
MMP3P08254 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MMP3P08254 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
MMP3P08254 AC099522.2-201ENST00000607001 744 ntBASIC19.11■□□□□ 0.65
MMP3P08254 AL645728.2-201ENST00000641974 660 ntBASIC19.11■□□□□ 0.65
MMP3P08254 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MMP3P08254 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
MMP3P08254 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP3P08254 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.11■□□□□ 0.65
MMP3P08254 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
MMP3P08254 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.1■□□□□ 0.65
MMP3P08254 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.1■□□□□ 0.65
MMP3P08254 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.1■□□□□ 0.65
MMP3P08254 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.1■□□□□ 0.65
MMP3P08254 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.1■□□□□ 0.65
MMP3P08254 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MMP3P08254 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.1■□□□□ 0.65
MMP3P08254 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MMP3P08254 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP3P08254 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP3P08254 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.1■□□□□ 0.65
MMP3P08254 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 AL355312.1-201ENST00000407115 2176 ntBASIC19.09■□□□□ 0.65
MMP3P08254 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 AL355306.1-201ENST00000415580 579 ntBASIC19.09■□□□□ 0.65
MMP3P08254 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.09■□□□□ 0.65
MMP3P08254 AC140658.5-201ENST00000438532 169 ntBASIC19.09■□□□□ 0.65
MMP3P08254 AC023141.5-201ENST00000458585 616 ntBASIC19.09■□□□□ 0.65
MMP3P08254 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
MMP3P08254 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
MMP3P08254 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.09■□□□□ 0.65
MMP3P08254 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP3P08254 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
MMP3P08254 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP3P08254 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
MMP3P08254 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.08■□□□□ 0.65
MMP3P08254 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP3P08254 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.08■□□□□ 0.65
MMP3P08254 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.65
MMP3P08254 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP3P08254 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP3P08254 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP3P08254 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
MMP3P08254 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.08■□□□□ 0.64
MMP3P08254 TIMM8BP1-201ENST00000452384 211 ntBASIC19.08■□□□□ 0.64
MMP3P08254 HLA-J-203ENST00000494367 1087 ntBASIC19.08■□□□□ 0.64
MMP3P08254 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
MMP3P08254 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.08■□□□□ 0.64
MMP3P08254 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.08■□□□□ 0.64
MMP3P08254 AC004449.1-201ENST00000564240 433 ntBASIC19.08■□□□□ 0.64
MMP3P08254 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
MMP3P08254 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP3P08254 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
MMP3P08254 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.08■□□□□ 0.64
MMP3P08254 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms