Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SLC28A1O00337 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SLC28A1O00337 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SLC28A1O00337 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
SLC28A1O00337 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SLC28A1O00337 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.75■□□□□ 0.27
SLC28A1O00337 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SLC28A1O00337 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.75■□□□□ 0.27
SLC28A1O00337 DUX4L26-201ENST00000489078 1255 ntBASIC16.75■□□□□ 0.27
SLC28A1O00337 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.75■□□□□ 0.27
SLC28A1O00337 KRT8P26-201ENST00000534154 1276 ntBASIC16.75■□□□□ 0.27
SLC28A1O00337 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.75■□□□□ 0.27
SLC28A1O00337 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.75■□□□□ 0.27
SLC28A1O00337 AC005336.2-201ENST00000593183 939 ntBASIC16.75■□□□□ 0.27
SLC28A1O00337 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 AC124067.4-201ENST00000519691 2379 ntBASIC16.75■□□□□ 0.27
SLC28A1O00337 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 AL049757.1-201ENST00000616842 1596 ntBASIC16.75■□□□□ 0.27
SLC28A1O00337 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.75■□□□□ 0.27
SLC28A1O00337 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.75■□□□□ 0.27
SLC28A1O00337 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SLC28A1O00337 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.75■□□□□ 0.27
SLC28A1O00337 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SLC28A1O00337 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.75■□□□□ 0.27
SLC28A1O00337 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SLC28A1O00337 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
SLC28A1O00337 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 AL136038.3-201ENST00000561909 1096 ntBASIC16.74■□□□□ 0.27
SLC28A1O00337 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.74■□□□□ 0.27
SLC28A1O00337 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.74■□□□□ 0.27
SLC28A1O00337 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SLC28A1O00337 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.74■□□□□ 0.27
SLC28A1O00337 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SLC28A1O00337 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SLC28A1O00337 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SLC28A1O00337 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 KRT8P10-201ENST00000450021 1447 ntBASIC16.73■□□□□ 0.27
SLC28A1O00337 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SLC28A1O00337 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.73■□□□□ 0.27
SLC28A1O00337 AL845331.1-201ENST00000424978 1190 ntBASIC16.73■□□□□ 0.27
SLC28A1O00337 STK25P1-201ENST00000585406 838 ntBASIC16.73■□□□□ 0.27
SLC28A1O00337 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms