Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 PCDHA14-201ENST00000506751 2298 ntBASIC18.19■□□□□ 0.5
PCDHA3Q9Y5H8 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 AC018695.7-201ENST00000624587 2492 ntBASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 AC124947.2-201ENST00000547118 1133 ntBASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 AC011840.4-201ENST00000578471 627 ntBASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 IGHV3-41-201ENST00000613121 348 ntBASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHA3Q9Y5H8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 DUX4L26-201ENST00000489078 1255 ntBASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 KRT8P26-201ENST00000534154 1276 ntBASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 AL136038.3-201ENST00000561909 1096 ntBASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 LINC01238-205ENST00000567549 1107 ntBASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 AL353593.2-201ENST00000602529 1483 ntBASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDHA3Q9Y5H8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms