Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 AC138028.4-201ENST00000564984 1845 ntBASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 AL355306.1-201ENST00000415580 579 ntBASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 REM2-202ENST00000536884 1331 ntTSL 2 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 HLA-DQB1-201ENST00000374943 1656 ntBASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC32.85■■■□□ 2.85
SHROOM4Q9ULL8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 CRB3P1-201ENST00000449338 276 ntBASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM4Q9ULL8 BICD1-207ENST00000551848 1962 ntBASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 OR8S1-201ENST00000310194 1080 ntBASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SHROOM4Q9ULL8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 TFAMP1-201ENST00000412727 736 ntBASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 LINC00982-205ENST00000420957 435 ntBASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 DUX4L27-201ENST00000554796 1261 ntBASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 AP001059.3-201ENST00000619053 235 ntBASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 AC008761.3-201ENST00000624803 892 ntBASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SHROOM4Q9ULL8 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 PTCHD3P3-201ENST00000403073 906 ntBASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 BASP1P1-201ENST00000430708 665 ntBASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 AC112191.1-201ENST00000523689 701 ntBASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 MIR6752-201ENST00000618442 71 ntBASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
SHROOM4Q9ULL8 AC055876.3-201ENST00000431496 288 ntBASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 AC002558.1-201ENST00000488906 803 ntBASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 IGHV3-52-201ENST00000519770 353 ntBASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 AC099522.2-201ENST00000607001 744 ntBASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 AC138649.4-201ENST00000612222 287 ntBASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 SERF2-217ENST00000630046 862 ntTSL 5 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms