Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
VPS28Q9UK41 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS28Q9UK41 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 AC004817.3-201ENST00000602957 2129 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 SIGLEC16-201ENST00000599858 1437 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 AC005104.2-201ENST00000427818 678 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 AP001005.1-201ENST00000571755 1248 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 STK25P1-201ENST00000585406 838 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 MTDHP4-201ENST00000600287 670 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 AL022326.1-202ENST00000641533 845 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS28Q9UK41 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 HLA-A-201ENST00000376802 1334 ntBASIC17.92■□□□□ 0.46
VPS28Q9UK41 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS28Q9UK41 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 AL031284.1-201ENST00000419297 478 ntBASIC17.91■□□□□ 0.46
VPS28Q9UK41 STK19B-204ENST00000512515 211 ntBASIC17.91■□□□□ 0.46
VPS28Q9UK41 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS28Q9UK41 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VPS28Q9UK41 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS28Q9UK41 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS28Q9UK41 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS28Q9UK41 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS28Q9UK41 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS28Q9UK41 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
VPS28Q9UK41 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms