Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ACTL9-202ENST00000612068 1252 ntBASIC19.58■□□□□ 0.72
COL20A1Q9P218 MIR3687-1-201ENST00000614492 61 ntBASIC19.58■□□□□ 0.72
COL20A1Q9P218 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL20A1Q9P218 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL20A1Q9P218 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL20A1Q9P218 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.58■□□□□ 0.72
COL20A1Q9P218 AC025580.3-201ENST00000617932 1424 ntBASIC19.58■□□□□ 0.72
COL20A1Q9P218 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL20A1Q9P218 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL20A1Q9P218 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.57■□□□□ 0.72
COL20A1Q9P218 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 AC004967.1-201ENST00000453589 447 ntBASIC19.57■□□□□ 0.72
COL20A1Q9P218 PDPK2P-202ENST00000562415 1191 ntBASIC19.57■□□□□ 0.72
COL20A1Q9P218 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL20A1Q9P218 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL20A1Q9P218 AC067852.2-201ENST00000590513 2313 ntBASIC19.57■□□□□ 0.72
COL20A1Q9P218 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 RPS8P6-201ENST00000426177 609 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 FAM185BP-201ENST00000443595 716 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 CXCL1P1-201ENST00000502804 216 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 AP001160.2-201ENST00000596071 487 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 AL078644.1-201ENST00000609881 752 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 RNF165-205ENST00000588679 2904 ntBASIC19.56■□□□□ 0.72
COL20A1Q9P218 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL20A1Q9P218 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL20A1Q9P218 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 YBX1P5-201ENST00000509441 847 ntBASIC19.55■□□□□ 0.72
COL20A1Q9P218 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL20A1Q9P218 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL20A1Q9P218 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 AL133373.2-201ENST00000623187 2828 ntBASIC19.54■□□□□ 0.72
COL20A1Q9P218 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 AC005829.1-201ENST00000570002 483 ntBASIC19.54■□□□□ 0.72
COL20A1Q9P218 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.54■□□□□ 0.72
COL20A1Q9P218 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL20A1Q9P218 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms