Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.19■□□□□ 0.34
MKS1Q9NXB0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 FRMD8P1-201ENST00000440433 1524 ntBASIC17.18■□□□□ 0.34
MKS1Q9NXB0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 AC092597.1-201ENST00000487352 616 ntBASIC17.18■□□□□ 0.34
MKS1Q9NXB0 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 AL049757.1-201ENST00000616842 1596 ntBASIC17.18■□□□□ 0.34
MKS1Q9NXB0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MKS1Q9NXB0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AL513523.2-202ENST00000427283 2040 ntBASIC17.17■□□□□ 0.34
MKS1Q9NXB0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 COX11P1-201ENST00000489116 835 ntBASIC17.17■□□□□ 0.34
MKS1Q9NXB0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 STK25P1-201ENST00000585406 838 ntBASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AC145285.6-201ENST00000604632 637 ntBASIC17.17■□□□□ 0.34
MKS1Q9NXB0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AP006294.2-201ENST00000641667 209 ntBASIC17.17■□□□□ 0.34
MKS1Q9NXB0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MKS1Q9NXB0 AC022188.1-201ENST00000620960 1664 ntBASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms