Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 AC100757.3-201ENST00000622361 1406 ntBASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF541Q9H0D2 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
ZNF541Q9H0D2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 AL020996.1-203ENST00000536896 2307 ntBASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF541Q9H0D2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 AP000842.3-202ENST00000569238 1080 ntBASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF541Q9H0D2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 AL590560.3-201ENST00000623350 461 ntBASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF541Q9H0D2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 SPTLC1P1-201ENST00000447199 261 ntBASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 KRT17P7-201ENST00000451704 1104 ntBASIC20.61■□□□□ 0.89
ZNF541Q9H0D2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms