Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC103564.2-201ENST00000432853 1299 ntBASIC15.88■□□□□ 0.13
NPAS1Q99742 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 AC079781.3-201ENST00000449110 356 ntBASIC15.88■□□□□ 0.13
NPAS1Q99742 AC002558.1-201ENST00000488906 803 ntBASIC15.88■□□□□ 0.13
NPAS1Q99742 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.88■□□□□ 0.13
NPAS1Q99742 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
NPAS1Q99742 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.88■□□□□ 0.13
NPAS1Q99742 AC073592.5-201ENST00000624854 528 ntBASIC15.88■□□□□ 0.13
NPAS1Q99742 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.88■□□□□ 0.13
NPAS1Q99742 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NPAS1Q99742 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.88■□□□□ 0.13
NPAS1Q99742 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.87■□□□□ 0.13
NPAS1Q99742 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 AC106795.1-205ENST00000512851 1056 ntBASIC15.87■□□□□ 0.13
NPAS1Q99742 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
NPAS1Q99742 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 AC111152.3-201ENST00000569699 673 ntBASIC15.87■□□□□ 0.13
NPAS1Q99742 STK25P1-201ENST00000585406 838 ntBASIC15.87■□□□□ 0.13
NPAS1Q99742 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.87■□□□□ 0.13
NPAS1Q99742 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
NPAS1Q99742 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
NPAS1Q99742 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NPAS1Q99742 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
NPAS1Q99742 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
NPAS1Q99742 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.86■□□□□ 0.13
NPAS1Q99742 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.86■□□□□ 0.13
NPAS1Q99742 FGFR3P6-201ENST00000457012 610 ntBASIC15.86■□□□□ 0.13
NPAS1Q99742 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.86■□□□□ 0.13
NPAS1Q99742 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.86■□□□□ 0.13
NPAS1Q99742 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.86■□□□□ 0.13
NPAS1Q99742 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 MTDHP3-201ENST00000594186 672 ntBASIC15.86■□□□□ 0.13
NPAS1Q99742 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.86■□□□□ 0.13
NPAS1Q99742 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
NPAS1Q99742 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.86■□□□□ 0.13
NPAS1Q99742 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.86■□□□□ 0.13
NPAS1Q99742 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
NPAS1Q99742 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms