Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 AC009477.1-201ENST00000452936 217 ntBASIC16.9■□□□□ 0.3
CFAP54Q96N23 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CFAP54Q96N23 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
CFAP54Q96N23 AC018445.3-201ENST00000624177 1945 ntBASIC16.9■□□□□ 0.3
CFAP54Q96N23 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
CFAP54Q96N23 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 AC122714.2-201ENST00000502787 707 ntBASIC16.89■□□□□ 0.29
CFAP54Q96N23 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
CFAP54Q96N23 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CFAP54Q96N23 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AL583810.1-201ENST00000553344 1045 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC244093.1-201ENST00000610837 814 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 ANKRD19P-201ENST00000338192 862 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 PTCHD3P3-201ENST00000403073 906 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 BNIP3P42-201ENST00000454982 569 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 BNIP3P29-201ENST00000598302 571 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC011447.5-201ENST00000616168 564 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC097637.2-201ENST00000624096 1997 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC098614.1-201ENST00000368528 745 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 ACTBP11-201ENST00000436287 1126 ntBASIC16.88■□□□□ 0.29
CFAP54Q96N23 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CFAP54Q96N23 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC16.88■□□□□ 0.29
CFAP54Q96N23 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CFAP54Q96N23 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CFAP54Q96N23 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 AL355994.2-201ENST00000447882 704 ntBASIC16.87■□□□□ 0.29
CFAP54Q96N23 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.87■□□□□ 0.29
CFAP54Q96N23 MIR4453-201ENST00000584019 89 ntBASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms