Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 GPR32P1-201ENST00000601788 811 ntBASIC18.81■□□□□ 0.6
CCDC42Q96M95 AC011558.1-201ENST00000623459 338 ntBASIC18.81■□□□□ 0.6
CCDC42Q96M95 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 AC097374.2-201ENST00000618617 1306 ntBASIC18.8■□□□□ 0.6
CCDC42Q96M95 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 MIR662-201ENST00000384847 95 ntBASIC18.8■□□□□ 0.6
CCDC42Q96M95 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 AC018695.7-201ENST00000624587 2492 ntBASIC18.8■□□□□ 0.6
CCDC42Q96M95 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 AC092053.1-201ENST00000605787 1936 ntBASIC18.8■□□□□ 0.6
CCDC42Q96M95 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC42Q96M95 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC42Q96M95 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCDC42Q96M95 COX5BP2-201ENST00000392354 334 ntBASIC18.79■□□□□ 0.6
CCDC42Q96M95 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC42Q96M95 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 AC010460.3-201ENST00000511359 1579 ntBASIC18.78■□□□□ 0.6
CCDC42Q96M95 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 AC087499.1-201ENST00000418141 1075 ntBASIC18.78■□□□□ 0.6
CCDC42Q96M95 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC42Q96M95 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms