Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SEL1L3-210ENST00000513416 2344 ntTSL 211.41□□□□□ -0.582e-22■□□□□ 10.6
UPF1Q92900 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC9.78□□□□□ -0.842e-22■□□□□ 10.6
UPF1Q92900 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.532e-6■□□□□ 10.6
UPF1Q92900 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.62□□□□□ -1.512e-6■□□□□ 10.6
UPF1Q92900 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.335e-6■□□□□ 10.6
UPF1Q92900 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC28.59■■■□□ 2.171e-7■□□□□ 10.6
UPF1Q92900 RBCK1-210ENST00000441733 961 ntTSL 525.29■■□□□ 1.641e-7■□□□□ 10.6
UPF1Q92900 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC25.16■■□□□ 1.621e-7■□□□□ 10.6
UPF1Q92900 RBCK1-205ENST00000400245 1024 ntTSL 324.81■■□□□ 1.561e-7■□□□□ 10.6
UPF1Q92900 RBCK1-208ENST00000414880 765 ntTSL 320.35■□□□□ 0.851e-7■□□□□ 10.6
UPF1Q92900 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.611e-7■□□□□ 10.6
UPF1Q92900 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.86■□□□□ 0.611e-7■□□□□ 10.6
UPF1Q92900 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.27■□□□□ 0.521e-7■□□□□ 10.6
UPF1Q92900 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.15■□□□□ 0.51e-7■□□□□ 10.6
UPF1Q92900 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.481e-7■□□□□ 10.6
UPF1Q92900 RBCK1-209ENST00000415942 2613 ntTSL 517.51■□□□□ 0.391e-7■□□□□ 10.6
UPF1Q92900 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.391e-7■□□□□ 10.6
UPF1Q92900 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.31e-7■□□□□ 10.6
UPF1Q92900 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.221e-7■□□□□ 10.6
UPF1Q92900 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.211e-7■□□□□ 10.6
UPF1Q92900 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)16.14■□□□□ 0.171e-7■□□□□ 10.6
UPF1Q92900 RBCK1-207ENST00000411647 593 ntTSL 315.1■□□□□ 0.011e-7■□□□□ 10.6
UPF1Q92900 F7-206ENST00000541084 2873 ntTSL 2 BASIC12.46□□□□□ -0.421e-7■□□□□ 10.6
UPF1Q92900 F7-202ENST00000375581 3109 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.671e-7■□□□□ 10.6
UPF1Q92900 BTBD2-206ENST00000589200 858 ntTSL 534.68■■■■□ 3.142e-11■□□□□ 10.6
UPF1Q92900 KPNA6-204ENST00000471599 3941 ntTSL 28.85□□□□□ -0.998e-7■□□□□ 10.6
UPF1Q92900 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.468e-6■□□□□ 10.5
UPF1Q92900 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.48e-6■□□□□ 10.5
UPF1Q92900 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.763e-12■□□□□ 10.5
UPF1Q92900 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC33.31■■■□□ 2.922e-9■□□□□ 10.5
UPF1Q92900 TAZ-212ENST00000498029 537 ntTSL 217.12■□□□□ 0.332e-9■□□□□ 10.5
UPF1Q92900 SCARB1-204ENST00000535005 1845 ntTSL 1 (best)15.64■□□□□ 0.091e-7■□□□□ 10.5
UPF1Q92900 CDC42SE1-207ENST00000540998 3181 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.821e-6■□□□□ 10.5
UPF1Q92900 CDC42SE1-202ENST00000439374 3498 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.821e-6■□□□□ 10.5
UPF1Q92900 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.021e-6■□□□□ 10.5
UPF1Q92900 SLC35F5-209ENST00000469702 784 ntTSL 313.23□□□□□ -0.292e-6■□□□□ 10.5
UPF1Q92900 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.84□□□□□ -0.033e-6■□□□□ 10.5
UPF1Q92900 BLCAP-213ENST00000467603 439 ntTSL 323.82■■□□□ 1.45e-9■□□□□ 10.5
UPF1Q92900 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.885e-9■□□□□ 10.5
UPF1Q92900 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.775e-9■□□□□ 10.5
UPF1Q92900 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.325e-9■□□□□ 10.5
UPF1Q92900 TRNP1-202ENST00000531285 575 ntAPPRIS ALT2 TSL 232.52■■■□□ 2.81e-9■□□□□ 10.5
UPF1Q92900 AC079062.1-201ENST00000584544 1396 ntTSL 1 (best) BASIC11.91□□□□□ -0.51e-6■□□□□ 10.5
UPF1Q92900 AC079062.1-202ENST00000581011 2636 ntTSL 1 (best) BASIC11.5□□□□□ -0.571e-6■□□□□ 10.5
UPF1Q92900 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.19□□□□□ -1.581e-6■□□□□ 10.5
UPF1Q92900 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.091e-7■□□□□ 10.5
UPF1Q92900 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.6■□□□□ 0.091e-7■□□□□ 10.5
UPF1Q92900 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.76□□□□□ -0.051e-7■□□□□ 10.5
UPF1Q92900 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.75□□□□□ -0.051e-7■□□□□ 10.5
UPF1Q92900 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.11e-7■□□□□ 10.5
UPF1Q92900 MLXIPL-202ENST00000345114 3079 ntTSL 1 (best)13.96□□□□□ -0.171e-7■□□□□ 10.5
UPF1Q92900 KCNH2-206ENST00000532957 3374 ntTSL 219.67■□□□□ 0.741e-14■□□□□ 10.5
UPF1Q92900 KCNH2-204ENST00000461280 2430 ntTSL 1 (best)19.57■□□□□ 0.721e-14■□□□□ 10.5
UPF1Q92900 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.38■□□□□ 0.531e-14■□□□□ 10.5
UPF1Q92900 KCNH2-205ENST00000473610 2782 ntTSL 217.28■□□□□ 0.361e-14■□□□□ 10.5
UPF1Q92900 MOB1A-201ENST00000396049 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.457e-7■□□□□ 10.5
UPF1Q92900 RBM3-204ENST00000466764 1375 ntTSL 322.68■■□□□ 1.221e-19■□□□□ 10.5
UPF1Q92900 SSR3-205ENST00000467789 1039 ntTSL 2 BASIC14.87□□□□□ -0.036e-15■□□□□ 10.5
UPF1Q92900 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC20.95■□□□□ 0.955e-6■□□□□ 10.5
UPF1Q92900 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.865e-6■□□□□ 10.5
UPF1Q92900 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.61■□□□□ 0.415e-6■□□□□ 10.5
UPF1Q92900 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.82■□□□□ 0.285e-6■□□□□ 10.5
UPF1Q92900 ANXA6-213ENST00000522664 451 ntTSL 513.99□□□□□ -0.175e-6■□□□□ 10.5
UPF1Q92900 KXD1-213ENST00000600372 656 ntTSL 327.37■■□□□ 1.972e-6■□□□□ 10.5
UPF1Q92900 KXD1-212ENST00000600099 517 ntTSL 218.04■□□□□ 0.482e-6■□□□□ 10.5
UPF1Q92900 KXD1-205ENST00000595870 686 ntTSL 1 (best)16.69■□□□□ 0.262e-6■□□□□ 10.5
UPF1Q92900 KXD1-208ENST00000597438 635 ntTSL 315.03■□□□□ -02e-6■□□□□ 10.5
UPF1Q92900 CCDC85C-203ENST00000554996 619 ntTSL 414.73□□□□□ -0.053e-7■□□□□ 10.5
UPF1Q92900 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.181e-7■□□□□ 10.5
UPF1Q92900 H3F3B-203ENST00000586518 1701 nt33.73■■■□□ 2.995e-6■□□□□ 10.5
UPF1Q92900 KMT5A-205ENST00000461103 1000 ntTSL 233.19■■■□□ 2.91e-7■□□□□ 10.5
UPF1Q92900 CYB561-211ENST00000580691 1127 ntTSL 1 (best)31.88■■■□□ 2.695e-6■□□□□ 10.5
UPF1Q92900 MAPKAP1-211ENST00000433483 769 ntTSL 530.77■■■□□ 2.525e-6■□□□□ 10.5
UPF1Q92900 MAPKAP1-203ENST00000373496 693 ntTSL 329.18■■■□□ 2.265e-6■□□□□ 10.5
UPF1Q92900 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.49■■□□□ 1.835e-6■□□□□ 10.5
UPF1Q92900 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.31■■□□□ 1.81e-7■□□□□ 10.5
UPF1Q92900 C1orf159-207ENST00000434641 842 ntAPPRIS ALT2 TSL 525.94■■□□□ 1.745e-6■□□□□ 10.5
UPF1Q92900 ASAH1-219ENST00000636033 1940 ntTSL 525.24■■□□□ 1.635e-6■□□□□ 10.5
UPF1Q92900 ATXN7L3-207ENST00000589805 622 ntTSL 324.44■■□□□ 1.55e-6■□□□□ 10.5
UPF1Q92900 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC24.38■■□□□ 1.491e-7■□□□□ 10.5
UPF1Q92900 LMO2-203ENST00000411482 1519 ntTSL 1 (best)24.33■■□□□ 1.491e-7■□□□□ 10.5
UPF1Q92900 ASAH1-239ENST00000636920 1989 ntTSL 521.32■■□□□ 15e-6■□□□□ 10.5
UPF1Q92900 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.56■□□□□ 0.885e-6■□□□□ 10.5
UPF1Q92900 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.865e-6■□□□□ 10.5
UPF1Q92900 ASAH1-236ENST00000636815 1724 ntTSL 520.27■□□□□ 0.845e-6■□□□□ 10.5
UPF1Q92900 H3F3B-213ENST00000593254 894 ntTSL 520.23■□□□□ 0.835e-6■□□□□ 10.5
UPF1Q92900 ASAH1-216ENST00000635944 1960 ntTSL 519.79■□□□□ 0.765e-6■□□□□ 10.5
UPF1Q92900 ABCA2-217ENST00000479446 6295 ntTSL 1 (best)19.41■□□□□ 0.75e-6■□□□□ 10.5
UPF1Q92900 LMO2-204ENST00000464025 1550 ntTSL 1 (best)18.84■□□□□ 0.611e-7■□□□□ 10.5
UPF1Q92900 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.23■□□□□ 0.515e-6■□□□□ 10.5
UPF1Q92900 ASAH1-217ENST00000635998 1845 ntTSL 518.2■□□□□ 0.55e-6■□□□□ 10.5
UPF1Q92900 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.434e-9■□□□□ 10.5
UPF1Q92900 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.295e-6■□□□□ 10.5
UPF1Q92900 NUP54-205ENST00000507257 1938 ntTSL 516.8■□□□□ 0.281e-7■□□□□ 10.5
UPF1Q92900 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.255e-6■□□□□ 10.5
UPF1Q92900 ZDHHC3-207ENST00000443879 407 ntTSL 516.57■□□□□ 0.245e-6■□□□□ 10.5
UPF1Q92900 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.215e-6■□□□□ 10.5
UPF1Q92900 ASAH1-241ENST00000637013 2649 ntTSL 516.24■□□□□ 0.195e-6■□□□□ 10.5
UPF1Q92900 ENO2-209ENST00000538763 1646 ntTSL 5 BASIC16■□□□□ 0.155e-6■□□□□ 10.5
UPF1Q92900 KMT5A-203ENST00000437502 901 ntTSL 515.67■□□□□ 0.11e-7■□□□□ 10.5
Retrieved 100 of 15,879 protein–RNA pairs in 64.1 ms