Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 TP73-AS1-207ENST00000624167 988 ntBASIC17.01■□□□□ 0.31
VRK3Q8IV63 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 LTB4R2-202ENST00000528054 3092 ntBASIC17.01■□□□□ 0.31
VRK3Q8IV63 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17■□□□□ 0.31
VRK3Q8IV63 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 AC080080.1-201ENST00000625121 2420 ntBASIC17■□□□□ 0.31
VRK3Q8IV63 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
VRK3Q8IV63 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17■□□□□ 0.31
VRK3Q8IV63 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17■□□□□ 0.31
VRK3Q8IV63 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17■□□□□ 0.31
VRK3Q8IV63 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VRK3Q8IV63 AL139288.1-201ENST00000623748 933 ntBASIC17■□□□□ 0.31
VRK3Q8IV63 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VRK3Q8IV63 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VRK3Q8IV63 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 AP001094.4-201ENST00000579008 2176 ntBASIC16.99■□□□□ 0.31
VRK3Q8IV63 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.99■□□□□ 0.31
VRK3Q8IV63 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VRK3Q8IV63 HCG11-201ENST00000411553 5696 ntBASIC16.99■□□□□ 0.31
VRK3Q8IV63 AC097637.2-201ENST00000624096 1997 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AC138932.1-201ENST00000534164 6830 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms