Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
USP39Q53GS9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP39Q53GS9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
USP39Q53GS9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.69■□□□□ 0.42
USP39Q53GS9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.69■□□□□ 0.42
USP39Q53GS9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.69■□□□□ 0.42
USP39Q53GS9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 AC254562.1-201ENST00000417586 456 ntBASIC17.69■□□□□ 0.42
USP39Q53GS9 YBX1P5-201ENST00000509441 847 ntBASIC17.69■□□□□ 0.42
USP39Q53GS9 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 MIR4751-201ENST00000578027 74 ntBASIC17.69■□□□□ 0.42
USP39Q53GS9 MIR4469-201ENST00000583919 79 ntBASIC17.69■□□□□ 0.42
USP39Q53GS9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.69■□□□□ 0.42
USP39Q53GS9 AC004706.3-202ENST00000621574 984 ntBASIC17.69■□□□□ 0.42
USP39Q53GS9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
USP39Q53GS9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP39Q53GS9 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.69■□□□□ 0.42
USP39Q53GS9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
USP39Q53GS9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.69■□□□□ 0.42
USP39Q53GS9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP39Q53GS9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.68■□□□□ 0.42
USP39Q53GS9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
USP39Q53GS9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
USP39Q53GS9 COX5BP2-201ENST00000392354 334 ntBASIC17.68■□□□□ 0.42
USP39Q53GS9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.68■□□□□ 0.42
USP39Q53GS9 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.68■□□□□ 0.42
USP39Q53GS9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 C20orf181-201ENST00000623918 480 ntBASIC17.68■□□□□ 0.42
USP39Q53GS9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.68■□□□□ 0.42
USP39Q53GS9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.68■□□□□ 0.42
USP39Q53GS9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP39Q53GS9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.67■□□□□ 0.42
USP39Q53GS9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
USP39Q53GS9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
USP39Q53GS9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
USP39Q53GS9 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.67■□□□□ 0.42
USP39Q53GS9 VN2R19P-201ENST00000442399 1052 ntBASIC17.67■□□□□ 0.42
USP39Q53GS9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.67■□□□□ 0.42
USP39Q53GS9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.67■□□□□ 0.42
USP39Q53GS9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms