Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 ABALON-201ENST00000629058 1903 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 AC129492.6-201ENST00000611383 1305 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 MIR943-201ENST00000401286 94 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 STK25P1-201ENST00000585406 838 ntBASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC88AQ3V6T2 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 AL354751.1-201ENST00000412768 1863 ntBASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 AC005237.2-201ENST00000434368 219 ntBASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 AC079140.1-201ENST00000508039 487 ntBASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 AC097493.3-201ENST00000509725 367 ntBASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC88AQ3V6T2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 AC004890.2-204ENST00000481968 304 ntBASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 INGX-202ENST00000489074 768 ntBASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 GNAS-203ENST00000306120 1878 ntBASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 BASP1P1-201ENST00000430708 665 ntBASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC88AQ3V6T2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 IGHV3-52-201ENST00000519770 353 ntBASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 RARRES2P8-201ENST00000566335 367 ntBASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 AL158211.3-201ENST00000607385 239 ntBASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC88AQ3V6T2 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms