Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX4Q33E94 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.23■□□□□ 0.19
RFX4Q33E94 NAPSB-206ENST00000562112 1266 ntBASIC16.23■□□□□ 0.19
RFX4Q33E94 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RFX4Q33E94 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX4Q33E94 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
RFX4Q33E94 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX4Q33E94 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX4Q33E94 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX4Q33E94 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX4Q33E94 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.23■□□□□ 0.19
RFX4Q33E94 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RFX4Q33E94 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RFX4Q33E94 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
RFX4Q33E94 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RFX4Q33E94 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 CYP2T1P-202ENST00000641596 2535 ntBASIC16.22■□□□□ 0.19
RFX4Q33E94 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.22■□□□□ 0.19
RFX4Q33E94 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 PVRIG2P-201ENST00000435460 978 ntBASIC16.22■□□□□ 0.19
RFX4Q33E94 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.22■□□□□ 0.19
RFX4Q33E94 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 BX276092.7-203ENST00000637198 1536 ntBASIC16.22■□□□□ 0.19
RFX4Q33E94 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX4Q33E94 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX4Q33E94 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX4Q33E94 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 KRT8P9-201ENST00000558927 1449 ntBASIC16.21■□□□□ 0.19
RFX4Q33E94 PCDHA1-201ENST00000378133 2726 ntBASIC16.21■□□□□ 0.19
RFX4Q33E94 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RFX4Q33E94 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.21■□□□□ 0.19
RFX4Q33E94 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 HMGA1P5-201ENST00000412453 271 ntBASIC16.21■□□□□ 0.19
RFX4Q33E94 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.21■□□□□ 0.19
RFX4Q33E94 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.21■□□□□ 0.19
RFX4Q33E94 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.21■□□□□ 0.19
RFX4Q33E94 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX4Q33E94 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX4Q33E94 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX4Q33E94 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFX4Q33E94 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFX4Q33E94 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.21■□□□□ 0.18
RFX4Q33E94 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFX4Q33E94 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms