Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
PCDH1Q08174 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDH1Q08174 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
PCDH1Q08174 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDH1Q08174 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDH1Q08174 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.79■□□□□ 0.28
PCDH1Q08174 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 AC104819.1-201ENST00000504587 486 ntBASIC16.79■□□□□ 0.28
PCDH1Q08174 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PCDH1Q08174 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.79■□□□□ 0.28
PCDH1Q08174 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDH1Q08174 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 LINC02012-201ENST00000608206 1725 ntBASIC16.79■□□□□ 0.28
PCDH1Q08174 AC093525.9-201ENST00000624961 1746 ntBASIC16.79■□□□□ 0.28
PCDH1Q08174 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDH1Q08174 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDH1Q08174 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDH1Q08174 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDH1Q08174 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH1Q08174 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
PCDH1Q08174 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDH1Q08174 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH1Q08174 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH1Q08174 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDH1Q08174 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
PCDH1Q08174 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDH1Q08174 STK19B-204ENST00000512515 211 ntBASIC16.78■□□□□ 0.28
PCDH1Q08174 AC074051.2-201ENST00000565115 352 ntBASIC16.78■□□□□ 0.28
PCDH1Q08174 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDH1Q08174 AC073592.4-201ENST00000623827 446 ntBASIC16.78■□□□□ 0.28
PCDH1Q08174 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms