Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.94□□□□□ -0.02
ABCA4P78363 MRPL20P1-201ENST00000400819 433 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 AC004461.1-201ENST00000412461 403 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 AC023141.13-201ENST00000604991 943 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
ABCA4P78363 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.93□□□□□ -0.02
ABCA4P78363 AC019129.2-201ENST00000609837 1235 ntBASIC14.93□□□□□ -0.02
ABCA4P78363 GGTLC5P-201ENST00000617623 998 ntBASIC14.93□□□□□ -0.02
ABCA4P78363 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.93□□□□□ -0.02
ABCA4P78363 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
ABCA4P78363 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ABCA4P78363 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA4P78363 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
ABCA4P78363 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA4P78363 FAM58CP-201ENST00000435741 640 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.92□□□□□ -0.02
ABCA4P78363 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.92□□□□□ -0.02
ABCA4P78363 AL353135.1-201ENST00000606729 504 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA4P78363 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA4P78363 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.92□□□□□ -0.02
ABCA4P78363 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.92□□□□□ -0.02
ABCA4P78363 AC005034.1-201ENST00000426657 489 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 AC093214.1-201ENST00000511688 1107 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.92□□□□□ -0.02
ABCA4P78363 AC105339.1-204ENST00000636249 355 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 AF228730.6-201ENST00000641497 218 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 AC084121.3-201ENST00000641716 218 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 AC105233.6-201ENST00000642093 218 ntBASIC14.92□□□□□ -0.02
ABCA4P78363 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
ABCA4P78363 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA4P78363 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA4P78363 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA4P78363 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA4P78363 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.91□□□□□ -0.02
ABCA4P78363 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.91□□□□□ -0.02
ABCA4P78363 DDX43P3-201ENST00000441064 443 ntBASIC14.91□□□□□ -0.02
ABCA4P78363 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.91□□□□□ -0.02
ABCA4P78363 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
ABCA4P78363 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA4P78363 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms