Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH11P55287 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH11P55287 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH11P55287 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CDH11P55287 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH11P55287 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
CDH11P55287 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH11P55287 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CDH11P55287 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
CDH11P55287 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 DDX43P3-201ENST00000441064 443 ntBASIC15.98■□□□□ 0.15
CDH11P55287 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CDH11P55287 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
CDH11P55287 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CDH11P55287 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CDH11P55287 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH11P55287 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH11P55287 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDH11P55287 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH11P55287 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 AL391807.1-203ENST00000604392 2365 ntBASIC15.97■□□□□ 0.15
CDH11P55287 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
CDH11P55287 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
CDH11P55287 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.97■□□□□ 0.15
CDH11P55287 HLA-F-220ENST00000434407 884 ntBASIC15.97■□□□□ 0.15
CDH11P55287 BX276092.5-203ENST00000456199 560 ntBASIC15.97■□□□□ 0.15
CDH11P55287 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH11P55287 AC011498.5-201ENST00000592027 486 ntBASIC15.97■□□□□ 0.15
CDH11P55287 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 AL121672.3-201ENST00000608644 468 ntBASIC15.97■□□□□ 0.15
CDH11P55287 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CDH11P55287 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH11P55287 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH11P55287 AC106886.4-201ENST00000623557 2502 ntBASIC15.97■□□□□ 0.15
CDH11P55287 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH11P55287 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CDH11P55287 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH11P55287 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.96■□□□□ 0.15
CDH11P55287 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH11P55287 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDH11P55287 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDH11P55287 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH11P55287 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CDH11P55287 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms