Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
BRCA1P38398 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
BRCA1P38398 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 AP006294.1-201ENST00000415407 339 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.9■□□□□ 0.94
BRCA1P38398 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 RN7SL837P-201ENST00000463010 287 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
BRCA1P38398 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.9■□□□□ 0.94
BRCA1P38398 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
BRCA1P38398 AC016027.1-202ENST00000607927 1699 ntBASIC20.9■□□□□ 0.94
BRCA1P38398 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCA1P38398 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
BRCA1P38398 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.89■□□□□ 0.93
BRCA1P38398 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.89■□□□□ 0.93
BRCA1P38398 AC104794.3-201ENST00000566840 1248 ntBASIC20.89■□□□□ 0.93
BRCA1P38398 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.89■□□□□ 0.93
BRCA1P38398 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
BRCA1P38398 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCA1P38398 SLC22A20-204ENST00000530038 1673 ntBASIC20.89■□□□□ 0.93
BRCA1P38398 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 HCG4-201ENST00000418983 998 ntBASIC20.88■□□□□ 0.93
BRCA1P38398 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 AP3S2-216ENST00000617003 1561 ntBASIC20.88■□□□□ 0.93
BRCA1P38398 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCA1P38398 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.88■□□□□ 0.93
BRCA1P38398 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 INE1-201ENST00000456273 945 ntBASIC20.88■□□□□ 0.93
BRCA1P38398 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
BRCA1P38398 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.88■□□□□ 0.93
BRCA1P38398 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.87■□□□□ 0.93
BRCA1P38398 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.87■□□□□ 0.93
BRCA1P38398 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.87■□□□□ 0.93
BRCA1P38398 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 RARRES2P9-201ENST00000565168 469 ntBASIC20.87■□□□□ 0.93
BRCA1P38398 AC106886.1-201ENST00000568660 600 ntBASIC20.87■□□□□ 0.93
BRCA1P38398 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 AL353732.1-201ENST00000569618 1459 ntBASIC20.87■□□□□ 0.93
BRCA1P38398 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.87■□□□□ 0.93
BRCA1P38398 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRCA1P38398 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 AL512384.1-201ENST00000406683 331 ntBASIC20.86■□□□□ 0.93
BRCA1P38398 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.86■□□□□ 0.93
BRCA1P38398 MIR6799-201ENST00000620297 69 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms