Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.38□□□□□ -0.11
SNCAP37840 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.38□□□□□ -0.11
SNCAP37840 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.38□□□□□ -0.11
SNCAP37840 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
SNCAP37840 AC010240.3-201ENST00000607688 395 ntBASIC14.38□□□□□ -0.11
SNCAP37840 AC010653.2-201ENST00000623505 997 ntBASIC14.38□□□□□ -0.11
SNCAP37840 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SNCAP37840 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.38□□□□□ -0.11
SNCAP37840 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.38□□□□□ -0.11
SNCAP37840 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 AC063926.3-201ENST00000624734 5658 ntBASIC14.37□□□□□ -0.11
SNCAP37840 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.37□□□□□ -0.11
SNCAP37840 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 AC128688.1-201ENST00000487626 519 ntBASIC14.37□□□□□ -0.11
SNCAP37840 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 FITM1-202ENST00000559294 800 ntBASIC14.37□□□□□ -0.11
SNCAP37840 AL512604.3-201ENST00000569583 964 ntBASIC14.37□□□□□ -0.11
SNCAP37840 Z99916.2-201ENST00000604037 246 ntBASIC14.37□□□□□ -0.11
SNCAP37840 AP000525.1-201ENST00000608286 694 ntBASIC14.37□□□□□ -0.11
SNCAP37840 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.37□□□□□ -0.11
SNCAP37840 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 AL024508.2-201ENST00000607749 1894 ntBASIC14.37□□□□□ -0.11
SNCAP37840 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 KRT17P2-201ENST00000300992 1314 ntBASIC14.37□□□□□ -0.11
SNCAP37840 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.37□□□□□ -0.11
SNCAP37840 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SNCAP37840 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SNCAP37840 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
SNCAP37840 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SNCAP37840 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SNCAP37840 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SNCAP37840 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SNCAP37840 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms