Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
SHMT2P34897 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.08■□□□□ 0.33
SHMT2P34897 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.08■□□□□ 0.33
SHMT2P34897 OR6D1P-202ENST00000641007 5290 ntBASIC17.08■□□□□ 0.33
SHMT2P34897 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.08■□□□□ 0.32
SHMT2P34897 AC106795.1-205ENST00000512851 1056 ntBASIC17.08■□□□□ 0.32
SHMT2P34897 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.08■□□□□ 0.32
SHMT2P34897 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.08■□□□□ 0.32
SHMT2P34897 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.08■□□□□ 0.32
SHMT2P34897 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.08■□□□□ 0.32
SHMT2P34897 AP001269.4-201ENST00000609611 512 ntBASIC17.08■□□□□ 0.32
SHMT2P34897 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.08■□□□□ 0.32
SHMT2P34897 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHMT2P34897 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHMT2P34897 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 AC002558.1-201ENST00000488906 803 ntBASIC17.07■□□□□ 0.32
SHMT2P34897 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 IGHV3-52-201ENST00000519770 353 ntBASIC17.07■□□□□ 0.32
SHMT2P34897 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 AC008608.2-201ENST00000606089 416 ntBASIC17.07■□□□□ 0.32
SHMT2P34897 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SHMT2P34897 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHMT2P34897 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHMT2P34897 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SHMT2P34897 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 AP005117.1-201ENST00000584346 1413 ntBASIC17.06■□□□□ 0.32
SHMT2P34897 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.06■□□□□ 0.32
SHMT2P34897 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SHMT2P34897 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.06■□□□□ 0.32
SHMT2P34897 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.06■□□□□ 0.32
SHMT2P34897 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 AL355877.3-201ENST00000622820 899 ntBASIC17.06■□□□□ 0.32
SHMT2P34897 AD001527.2-201ENST00000622994 785 ntBASIC17.06■□□□□ 0.32
SHMT2P34897 AP000867.4-201ENST00000641616 219 ntBASIC17.06■□□□□ 0.32
SHMT2P34897 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHMT2P34897 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.06■□□□□ 0.32
SHMT2P34897 AC006116.8-202ENST00000587620 1550 ntBASIC17.06■□□□□ 0.32
SHMT2P34897 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHMT2P34897 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHMT2P34897 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms