Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 AC079328.2-201ENST00000561241 3354 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 HBZP1-201ENST00000354915 429 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 MIR662-201ENST00000384847 95 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 PCED1CP-201ENST00000419887 785 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 RNF126P1-202ENST00000569893 925 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 AP000550.4-202ENST00000639755 178 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 AL121761.2-201ENST00000598007 1648 ntBASIC13.3□□□□□ -0.28
HLA-DMBP28068 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DMBP28068 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 AC005332.3-201ENST00000589904 676 ntBASIC13.29□□□□□ -0.28
HLA-DMBP28068 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 DFFB-212ENST00000625756 649 ntTSL 5 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 IER3-202ENST00000376377 1350 ntBASIC13.29□□□□□ -0.28
HLA-DMBP28068 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 LINC01311-201ENST00000565162 1445 ntBASIC13.29□□□□□ -0.28
HLA-DMBP28068 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 FER1L4-210ENST00000615531 5998 ntBASIC13.29□□□□□ -0.28
HLA-DMBP28068 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.29□□□□□ -0.28
HLA-DMBP28068 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HLA-DMBP28068 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HLA-DMBP28068 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms