Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ERCC3P19447 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.14■□□□□ 0.82
ERCC3P19447 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.14■□□□□ 0.81
ERCC3P19447 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.14■□□□□ 0.81
ERCC3P19447 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 AC100803.2-201ENST00000562459 1963 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.14■□□□□ 0.81
ERCC3P19447 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.14■□□□□ 0.81
ERCC3P19447 RPS15P9-201ENST00000494093 319 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 IGHV3-65-201ENST00000523210 341 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 AC027796.2-201ENST00000575326 344 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 MIR4751-201ENST00000578027 74 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 AC092865.6-201ENST00000642101 219 ntBASIC20.14■□□□□ 0.81
ERCC3P19447 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
ERCC3P19447 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
ERCC3P19447 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.14■□□□□ 0.81
ERCC3P19447 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.14■□□□□ 0.81
ERCC3P19447 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
ERCC3P19447 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ERCC3P19447 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
ERCC3P19447 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.13■□□□□ 0.81
ERCC3P19447 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 HMGN1P19-201ENST00000436976 333 ntBASIC20.13■□□□□ 0.81
ERCC3P19447 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 VN2R19P-201ENST00000442399 1052 ntBASIC20.13■□□□□ 0.81
ERCC3P19447 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.13■□□□□ 0.81
ERCC3P19447 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.13■□□□□ 0.81
ERCC3P19447 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 AC109462.3-201ENST00000573934 613 ntBASIC20.13■□□□□ 0.81
ERCC3P19447 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 AL355385.1-201ENST00000606123 409 ntBASIC20.13■□□□□ 0.81
ERCC3P19447 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.13■□□□□ 0.81
ERCC3P19447 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ERCC3P19447 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC3P19447 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 AC002310.6-201ENST00000624451 1377 ntBASIC20.12■□□□□ 0.81
ERCC3P19447 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 AC018845.2-201ENST00000568326 409 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms