Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LINC00628-201ENST00000628516 1289 ntBASIC21.08■□□□□ 0.96
COL4A1P02462 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A1P02462 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A1P02462 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
COL4A1P02462 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
COL4A1P02462 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL4A1P02462 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.07■□□□□ 0.96
COL4A1P02462 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.07■□□□□ 0.96
COL4A1P02462 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.07■□□□□ 0.96
COL4A1P02462 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.07■□□□□ 0.96
COL4A1P02462 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.07■□□□□ 0.96
COL4A1P02462 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A1P02462 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.07■□□□□ 0.96
COL4A1P02462 AC008764.6-201ENST00000595909 2069 ntBASIC21.07■□□□□ 0.96
COL4A1P02462 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A1P02462 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
COL4A1P02462 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.06■□□□□ 0.96
COL4A1P02462 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 MIR661-201ENST00000384842 89 ntBASIC21.06■□□□□ 0.96
COL4A1P02462 HMGA1P7-201ENST00000406908 502 ntBASIC21.06■□□□□ 0.96
COL4A1P02462 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.06■□□□□ 0.96
COL4A1P02462 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A1P02462 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A1P02462 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 AC079140.1-201ENST00000508039 487 ntBASIC21.06■□□□□ 0.96
COL4A1P02462 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A1P02462 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A1P02462 AC026120.1-201ENST00000611536 926 ntBASIC21.06■□□□□ 0.96
COL4A1P02462 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL4A1P02462 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
COL4A1P02462 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
COL4A1P02462 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A1P02462 NEFHP1-201ENST00000412845 2629 ntBASIC21.06■□□□□ 0.96
COL4A1P02462 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A1P02462 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A1P02462 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.05■□□□□ 0.96
COL4A1P02462 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A1P02462 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A1P02462 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A1P02462 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.04■□□□□ 0.96
COL4A1P02462 KRT18P32-201ENST00000424695 1287 ntBASIC21.04■□□□□ 0.96
COL4A1P02462 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COL4A1P02462 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.04■□□□□ 0.96
COL4A1P02462 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.04■□□□□ 0.96
COL4A1P02462 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
COL4A1P02462 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A1P02462 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.04■□□□□ 0.96
COL4A1P02462 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A1P02462 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms