Protein–RNA interactions for Protein: O43734

TRAF3IP2, Adapter protein CIKS, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2O43734 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAF3IP2O43734 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 NFIC-211ENST00000641145 8399 ntBASIC15.52■□□□□ 0.08
TRAF3IP2O43734 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 SLC25A1P3-201ENST00000395415 828 ntBASIC15.52■□□□□ 0.08
TRAF3IP2O43734 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 PRELID1P1-202ENST00000567272 903 ntBASIC15.52■□□□□ 0.08
TRAF3IP2O43734 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAF3IP2O43734 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TRAF3IP2O43734 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 SPDYE21P-201ENST00000413323 827 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TSPY19P-201ENST00000418461 509 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TSPY18P-201ENST00000441642 509 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 KRT18P31-201ENST00000506277 1292 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 CLEC4GP1-201ENST00000596555 870 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 AP001269.4-201ENST00000609611 512 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 AL732292.2-201ENST00000609649 430 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 AL121772.3-201ENST00000610840 674 ntBASIC15.51■□□□□ 0.07
TRAF3IP2O43734 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAF3IP2O43734 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAF3IP2O43734 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAF3IP2O43734 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAF3IP2O43734 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
TRAF3IP2O43734 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAF3IP2O43734 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms