Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SDCBPO00560 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.85□□□□□ -0.03
SDCBPO00560 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SDCBPO00560 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 STARP1-201ENST00000397973 869 ntBASIC14.85□□□□□ -0.03
SDCBPO00560 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SDCBPO00560 SPDYE15P-201ENST00000424157 909 ntBASIC14.85□□□□□ -0.03
SDCBPO00560 AC117947.1-201ENST00000427448 529 ntBASIC14.85□□□□□ -0.03
SDCBPO00560 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.85□□□□□ -0.03
SDCBPO00560 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 AC113404.2-201ENST00000507884 177 ntBASIC14.85□□□□□ -0.03
SDCBPO00560 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SDCBPO00560 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.85□□□□□ -0.03
SDCBPO00560 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.85□□□□□ -0.03
SDCBPO00560 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
SDCBPO00560 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SDCBPO00560 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SDCBPO00560 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.84□□□□□ -0.03
SDCBPO00560 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SDCBPO00560 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SDCBPO00560 AC008741.2-201ENST00000612792 3115 ntBASIC14.84□□□□□ -0.03
SDCBPO00560 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.84□□□□□ -0.03
SDCBPO00560 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.84□□□□□ -0.03
SDCBPO00560 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.84□□□□□ -0.03
SDCBPO00560 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.84□□□□□ -0.03
SDCBPO00560 AC079602.3-201ENST00000623931 403 ntBASIC14.84□□□□□ -0.03
SDCBPO00560 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.84□□□□□ -0.03
SDCBPO00560 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SDCBPO00560 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 FLJ38576-201ENST00000623820 2459 ntBASIC14.84□□□□□ -0.03
SDCBPO00560 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SDCBPO00560 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
SDCBPO00560 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.83□□□□□ -0.03
SDCBPO00560 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
SDCBPO00560 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.83□□□□□ -0.03
SDCBPO00560 AC073508.3-201ENST00000619697 1419 ntBASIC14.83□□□□□ -0.03
SDCBPO00560 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
SDCBPO00560 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDCBPO00560 KRT89P-201ENST00000620027 1478 ntBASIC14.83□□□□□ -0.03
SDCBPO00560 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDCBPO00560 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDCBPO00560 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SDCBPO00560 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SDCBPO00560 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.83□□□□□ -0.03
SDCBPO00560 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.83□□□□□ -0.03
SDCBPO00560 AL139384.1-201ENST00000612143 3047 ntBASIC14.83□□□□□ -0.04
SDCBPO00560 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms