Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.14■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC105339.3-201ENST00000560043 636 ntBASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC008735.5-201ENST00000623544 497 ntBASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 AC104109.2-201ENST00000602919 1418 ntBASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMX2-CTNND1H3BSU7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 LINC01126-201ENST00000623515 1646 ntBASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 Z83851.2-201ENST00000609564 659 ntBASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMX2-CTNND1H3BSU7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 PCDH8P1-201ENST00000428983 2773 ntBASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.11■□□□□ 0.33
TMX2-CTNND1H3BSU7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms