Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 OR7E47P-204ENST00000575924 449 ntBASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 NOC2LP2-201ENST00000407594 1944 ntBASIC18.61■□□□□ 0.57
SMIM28A0A1B0GU29 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 GPALPP1-207ENST00000611650 899 ntBASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 AC010654.1-201ENST00000615722 808 ntBASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 GNAS-203ENST00000306120 1878 ntBASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMIM28A0A1B0GU29 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 IGLL3P-201ENST00000412472 434 ntBASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 AC023274.1-201ENST00000418278 595 ntBASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SMIM28A0A1B0GU29 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMIM28A0A1B0GU29 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMIM28A0A1B0GU29 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMIM28A0A1B0GU29 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMIM28A0A1B0GU29 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMIM28A0A1B0GU29 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms