Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC005336.2-201ENST00000593183 939 ntBASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC120114.3-201ENST00000611923 658 ntBASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC023511.2-201ENST00000618803 211 ntBASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 MRPL3P1-201ENST00000400109 1033 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AL590627.1-203ENST00000421194 1026 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AC096582.2-201ENST00000510860 516 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 MIR5100-201ENST00000579544 119 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AL591684.3-201ENST00000605187 298 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 BX640515.1-201ENST00000617215 977 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AC022211.2-201ENST00000585075 2527 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AL355312.1-201ENST00000407115 2176 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 AL138688.1-201ENST00000624851 1594 ntBASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB3Q9Y5E6 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AKR1C7P-201ENST00000305623 895 ntBASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AC009533.2-201ENST00000543664 586 ntBASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AP001005.1-201ENST00000571755 1248 ntBASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 HLA-A-201ENST00000376802 1334 ntBASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB3Q9Y5E6 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms