Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
UBE2D4Q9Y2X8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 TSPY7P-201ENST00000431358 1114 ntBASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
UBE2D4Q9Y2X8 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AC046158.3-201ENST00000624947 2558 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 HMGA1P5-201ENST00000412453 271 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 TSPY12P-201ENST00000421279 868 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AC002558.1-201ENST00000488906 803 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AC034232.1-201ENST00000506026 1064 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 AC092053.1-201ENST00000605787 1936 ntBASIC12.15□□□□□ -0.46
UBE2D4Q9Y2X8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms