Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
LIMA1Q9UHB6 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 EGFEM1P-202ENST00000431685 1563 ntBASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
LIMA1Q9UHB6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC104076.2-201ENST00000448912 469 ntBASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC092647.4-201ENST00000457211 535 ntBASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC063952.2-201ENST00000498792 1227 ntBASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AC111152.3-201ENST00000569699 673 ntBASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AL592071.1-201ENST00000611956 408 ntBASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMA1Q9UHB6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 OR6D1P-202ENST00000641007 5290 ntBASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 AC124864.1-201ENST00000623408 392 ntBASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMA1Q9UHB6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms