Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
DKK3Q9UBP4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 IL9RP2-201ENST00000423948 1312 ntBASIC17.51■□□□□ 0.39
DKK3Q9UBP4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.51■□□□□ 0.39
DKK3Q9UBP4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 AC004706.3-202ENST00000621574 984 ntBASIC17.51■□□□□ 0.39
DKK3Q9UBP4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
DKK3Q9UBP4 AC020763.4-201ENST00000623414 4170 ntBASIC17.5■□□□□ 0.39
DKK3Q9UBP4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 AC046185.3-201ENST00000623228 1824 ntBASIC17.5■□□□□ 0.39
DKK3Q9UBP4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 AC120114.3-201ENST00000611923 658 ntBASIC17.5■□□□□ 0.39
DKK3Q9UBP4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.5■□□□□ 0.39
DKK3Q9UBP4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
DKK3Q9UBP4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 AL022342.1-201ENST00000400363 863 ntBASIC17.49■□□□□ 0.39
DKK3Q9UBP4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
DKK3Q9UBP4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms