Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC42Q96M95 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC42Q96M95 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC42Q96M95 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC42Q96M95 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC42Q96M95 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC42Q96M95 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 ATP5G1P1-201ENST00000448724 379 ntBASIC18.83■□□□□ 0.6
CCDC42Q96M95 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 FLJ38576-201ENST00000623820 2459 ntBASIC18.83■□□□□ 0.6
CCDC42Q96M95 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.83■□□□□ 0.6
CCDC42Q96M95 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CCDC42Q96M95 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC42Q96M95 AC093525.9-201ENST00000624961 1746 ntBASIC18.83■□□□□ 0.6
CCDC42Q96M95 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC42Q96M95 PCDHB19P-201ENST00000570871 2371 ntBASIC18.82■□□□□ 0.6
CCDC42Q96M95 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC42Q96M95 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC42Q96M95 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AC092597.1-201ENST00000487352 616 ntBASIC18.81■□□□□ 0.6
CCDC42Q96M95 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC42Q96M95 AC010203.1-204ENST00000548782 407 ntBASIC18.81■□□□□ 0.6
CCDC42Q96M95 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms