Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 HBZP1-201ENST00000354915 429 ntBASIC13.09□□□□□ -0.31
LINC00477Q96M19 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 IGHV3-52-201ENST00000519770 353 ntBASIC13.09□□□□□ -0.31
LINC00477Q96M19 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 TMED1-207ENST00000591695 809 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 AC133561.5-201ENST00000635547 218 ntBASIC13.09□□□□□ -0.31
LINC00477Q96M19 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
LINC00477Q96M19 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00477Q96M19 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00477Q96M19 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00477Q96M19 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00477Q96M19 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00477Q96M19 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.31
LINC00477Q96M19 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00477Q96M19 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TERF1P1-201ENST00000311003 1181 ntBASIC13.08□□□□□ -0.32
LINC00477Q96M19 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 AC097493.4-201ENST00000641197 219 ntBASIC13.08□□□□□ -0.32
LINC00477Q96M19 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00477Q96M19 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00477Q96M19 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms