Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC005521.1-201ENST00000393351 872 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 AC113347.1-201ENST00000413321 391 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 AL137013.1-201ENST00000432946 1228 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.8■□□□□ 0.76
ERCC4Q92889 MTCL1P1-201ENST00000446207 792 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 AL359075.1-203ENST00000462729 1002 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 RNF126P1-202ENST00000569893 925 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.8■□□□□ 0.76
ERCC4Q92889 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ERCC4Q92889 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 AC005915.1-201ENST00000624912 2018 ntBASIC19.8■□□□□ 0.76
ERCC4Q92889 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
ERCC4Q92889 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 AC046185.3-201ENST00000623228 1824 ntBASIC19.79■□□□□ 0.76
ERCC4Q92889 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 AL118508.1-201ENST00000613502 2345 ntBASIC19.79■□□□□ 0.76
ERCC4Q92889 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 AC092053.1-201ENST00000605787 1936 ntBASIC19.79■□□□□ 0.76
ERCC4Q92889 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC4Q92889 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ERCC4Q92889 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC4Q92889 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.79■□□□□ 0.76
ERCC4Q92889 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.79■□□□□ 0.76
ERCC4Q92889 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.79■□□□□ 0.76
ERCC4Q92889 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.79■□□□□ 0.76
ERCC4Q92889 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC4Q92889 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC4Q92889 AC010460.3-201ENST00000511359 1579 ntBASIC19.78■□□□□ 0.76
ERCC4Q92889 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
ERCC4Q92889 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 BX276092.7-203ENST00000637198 1536 ntBASIC19.78■□□□□ 0.76
ERCC4Q92889 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.78■□□□□ 0.76
ERCC4Q92889 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 HBZP1-201ENST00000354915 429 ntBASIC19.78■□□□□ 0.76
ERCC4Q92889 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.78■□□□□ 0.76
ERCC4Q92889 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.78■□□□□ 0.76
ERCC4Q92889 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 ZNF444P1-201ENST00000559497 298 ntBASIC19.78■□□□□ 0.76
ERCC4Q92889 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 AC005363.2-201ENST00000618631 242 ntBASIC19.78■□□□□ 0.76
ERCC4Q92889 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ERCC4Q92889 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ERCC4Q92889 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC4Q92889 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
ERCC4Q92889 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms