Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 ACTG1P4-201ENST00000425123 1122 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 MIR4469-201ENST00000583919 79 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AL078644.1-201ENST00000609881 752 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 REXO1L11P-201ENST00000620964 1927 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 ABALON-201ENST00000629058 1903 ntBASIC16.94■□□□□ 0.3
LMX1AQ8TE12 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 PMS2P2-201ENST00000425039 1128 ntBASIC16.93■□□□□ 0.3
LMX1AQ8TE12 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 AC096734.2-201ENST00000562054 433 ntBASIC16.93■□□□□ 0.3
LMX1AQ8TE12 SNHG9-202ENST00000564014 471 ntBASIC16.93■□□□□ 0.3
LMX1AQ8TE12 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 C20orf181-201ENST00000623918 480 ntBASIC16.93■□□□□ 0.3
LMX1AQ8TE12 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 AL590787.1-201ENST00000568856 1315 ntBASIC16.93■□□□□ 0.3
LMX1AQ8TE12 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LMX1AQ8TE12 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 AL135999.2-201ENST00000622438 1686 ntBASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 HTR5BP-201ENST00000430851 1154 ntBASIC16.92■□□□□ 0.3
LMX1AQ8TE12 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 OR7E47P-204ENST00000575924 449 ntBASIC16.92■□□□□ 0.3
LMX1AQ8TE12 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1AQ8TE12 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms