Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 KRT18P2-201ENST00000447938 1258 ntBASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 MIR4751-201ENST00000578027 74 ntBASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CCDC60Q8IWA6 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 RNA5SP416-201ENST00000516838 111 ntBASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC60Q8IWA6 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 BX842568.4-201ENST00000421222 227 ntBASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 AC092865.5-201ENST00000545435 363 ntBASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 AC006538.3-201ENST00000612495 578 ntBASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC60Q8IWA6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 KRT18P13-201ENST00000400056 1290 ntBASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 VN2R19P-201ENST00000442399 1052 ntBASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 OR7E47P-204ENST00000575924 449 ntBASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC60Q8IWA6 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms