Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.72■■□□□ 1.07
COL5A3P25940 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.72■■□□□ 1.07
COL5A3P25940 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COL5A3P25940 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 AC007274.1-201ENST00000439805 662 ntBASIC21.72■■□□□ 1.07
COL5A3P25940 AC004890.2-204ENST00000481968 304 ntBASIC21.72■■□□□ 1.07
COL5A3P25940 ALG1L8P-201ENST00000533887 760 ntBASIC21.72■■□□□ 1.07
COL5A3P25940 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.72■■□□□ 1.07
COL5A3P25940 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL5A3P25940 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL5A3P25940 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A3P25940 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COL5A3P25940 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A3P25940 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 UXT-AS1-201ENST00000590504 1525 ntBASIC21.71■■□□□ 1.07
COL5A3P25940 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL5A3P25940 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 BASP1P1-201ENST00000430708 665 ntBASIC21.71■■□□□ 1.07
COL5A3P25940 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.71■■□□□ 1.07
COL5A3P25940 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A3P25940 KRT8P23-201ENST00000560090 1207 ntBASIC21.71■■□□□ 1.07
COL5A3P25940 AP000842.3-202ENST00000569238 1080 ntBASIC21.71■■□□□ 1.07
COL5A3P25940 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A3P25940 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A3P25940 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A3P25940 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A3P25940 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A3P25940 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL5A3P25940 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
COL5A3P25940 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.7■■□□□ 1.06
COL5A3P25940 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.7■■□□□ 1.06
COL5A3P25940 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.7■■□□□ 1.06
COL5A3P25940 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.7■■□□□ 1.06
COL5A3P25940 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL5A3P25940 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.7■■□□□ 1.06
COL5A3P25940 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.7■■□□□ 1.06
COL5A3P25940 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
COL5A3P25940 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.7■■□□□ 1.06
COL5A3P25940 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A3P25940 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
COL5A3P25940 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.7■■□□□ 1.06
COL5A3P25940 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A3P25940 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
COL5A3P25940 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.69■■□□□ 1.06
COL5A3P25940 TSSK5P-201ENST00000423978 907 ntBASIC21.69■■□□□ 1.06
COL5A3P25940 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A3P25940 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A3P25940 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL5A3P25940 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.69■■□□□ 1.06
COL5A3P25940 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.69■■□□□ 1.06
COL5A3P25940 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.69■■□□□ 1.06
COL5A3P25940 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.69■■□□□ 1.06
COL5A3P25940 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A3P25940 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.69■■□□□ 1.06
COL5A3P25940 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.68■■□□□ 1.06
COL5A3P25940 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
COL5A3P25940 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A3P25940 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A3P25940 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL5A3P25940 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A3P25940 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
COL5A3P25940 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.68■■□□□ 1.06
COL5A3P25940 HCG4-201ENST00000418983 998 ntBASIC21.68■■□□□ 1.06
COL5A3P25940 AC244107.1-201ENST00000442033 332 ntBASIC21.68■■□□□ 1.06
COL5A3P25940 SPDYE22P-201ENST00000582158 798 ntBASIC21.68■■□□□ 1.06
COL5A3P25940 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.68■■□□□ 1.06
COL5A3P25940 AL353732.1-201ENST00000569618 1459 ntBASIC21.68■■□□□ 1.06
COL5A3P25940 AC012569.1-201ENST00000591191 1524 ntBASIC21.68■■□□□ 1.06
COL5A3P25940 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL5A3P25940 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms