Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 UNC93B7-201ENST00000509439 705 ntBASIC17.68■□□□□ 0.42
HLA-DQB2P05538 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQB2P05538 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 SIGLEC16-201ENST00000599858 1437 ntBASIC17.67■□□□□ 0.42
HLA-DQB2P05538 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 REXO1L6P-202ENST00000619970 1078 ntBASIC17.67■□□□□ 0.42
HLA-DQB2P05538 AC073592.4-201ENST00000623827 446 ntBASIC17.67■□□□□ 0.42
HLA-DQB2P05538 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQB2P05538 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 AC004817.3-201ENST00000602957 2129 ntBASIC17.66■□□□□ 0.42
HLA-DQB2P05538 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 AP001094.4-201ENST00000579008 2176 ntBASIC17.66■□□□□ 0.42
HLA-DQB2P05538 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 RBM17P3-201ENST00000417687 1192 ntBASIC17.66■□□□□ 0.42
HLA-DQB2P05538 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DQB2P05538 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DQB2P05538 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DQB2P05538 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms