Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HLA-DQA1P01909 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AL163051.1-201ENST00000569214 1512 ntBASIC13.15□□□□□ -0.3
HLA-DQA1P01909 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AP003097.1-201ENST00000530657 1135 ntBASIC13.15□□□□□ -0.3
HLA-DQA1P01909 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 AC079328.2-201ENST00000561241 3354 ntBASIC13.15□□□□□ -0.3
HLA-DQA1P01909 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DQA1P01909 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.15□□□□□ -0.31
HLA-DQA1P01909 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
HLA-DQA1P01909 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
HLA-DQA1P01909 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 Z85996.1-201ENST00000494644 937 ntBASIC13.14□□□□□ -0.31
HLA-DQA1P01909 UNC93B5-201ENST00000530315 699 ntBASIC13.14□□□□□ -0.31
HLA-DQA1P01909 PRKY-204ENST00000533551 1019 ntBASIC13.14□□□□□ -0.31
HLA-DQA1P01909 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.14□□□□□ -0.31
HLA-DQA1P01909 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms