Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX3O95343 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.06■□□□□ 0.32
SIX3O95343 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX3O95343 AL136038.3-201ENST00000561909 1096 ntBASIC17.06■□□□□ 0.32
SIX3O95343 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX3O95343 AL138831.2-201ENST00000606564 490 ntBASIC17.06■□□□□ 0.32
SIX3O95343 IGHV3-41-201ENST00000613121 348 ntBASIC17.06■□□□□ 0.32
SIX3O95343 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.06■□□□□ 0.32
SIX3O95343 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX3O95343 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.06■□□□□ 0.32
SIX3O95343 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX3O95343 AC092053.1-201ENST00000605787 1936 ntBASIC17.06■□□□□ 0.32
SIX3O95343 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 AC093525.9-201ENST00000624961 1746 ntBASIC17.05■□□□□ 0.32
SIX3O95343 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.05■□□□□ 0.32
SIX3O95343 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX3O95343 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX3O95343 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 AGGF1P2-201ENST00000426656 2106 ntBASIC17.05■□□□□ 0.32
SIX3O95343 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX3O95343 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX3O95343 AC091607.1-201ENST00000490318 1060 ntBASIC17.04■□□□□ 0.32
SIX3O95343 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX3O95343 KRT8P26-201ENST00000534154 1276 ntBASIC17.04■□□□□ 0.32
SIX3O95343 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 AC090616.6-201ENST00000582640 721 ntBASIC17.04■□□□□ 0.32
SIX3O95343 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SIX3O95343 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX3O95343 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SIX3O95343 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SIX3O95343 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX3O95343 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX3O95343 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX3O95343 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
SIX3O95343 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.03■□□□□ 0.32
SIX3O95343 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX3O95343 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SIX3O95343 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX3O95343 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX3O95343 AL049757.1-201ENST00000616842 1596 ntBASIC17.03■□□□□ 0.32
SIX3O95343 AC005915.1-201ENST00000624912 2018 ntBASIC17.03■□□□□ 0.32
SIX3O95343 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SIX3O95343 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SIX3O95343 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX3O95343 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX3O95343 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms